whole genome contig assemblies from soapdenovo2  (Mendeley Ltd)

Journal: Data in Brief

Article Title: Dataset from genome sequencing, assembly and mining of microsatellite markers in barred-button quail ( Turnix suscitator )

doi: 10.1016/j.dib.2023.109288

Figure Lengend Snippet: The assemblies of T. suscitator sequences created through SOAPdenovo2 and SPAdes softwares were compared and evaluated for various parameters using QUAST-LG. This table details the comparative assembly statistics of the same.

Article Snippet: Data accessibility , Repository name: Mendeley Data and National Center for Biotechnology Information (NCBI) For Mendeley data Whole genome contig assemblies from SOAPdenovo2 and SPAdes aligners are stored in folder “Soapdenovo2_assembly” and “Spades_assembly” respectively. Output file from Krait software, containing information of the mined genome wide microsatellite motifs and its various attributes are stored in folder “Krait_output”, file name “Msat_BBQ_23092021.html”. Information regarding 50 most polymorphic microsatellite and its in-silico PCR amplification results are stored in folder “Krait_output”, file names “50_most_putative_primers” and “In_silico_validation” respectively. Microsatellite motif information for each primer is also stored in folder “Krait_output” under file name “In_silico_validation_with_motif_info”. Identifier DOI: 10.17632/hfntj4vhpb.2 Direct link to folder: https://data.mendeley.com/datasets/hfntj4vhpb/2 National Center for Biotechnology Information (NCBI) Datasets and information on the whole genome paired-end sequences can be obtained from: BioProject, BioSample and SRA numbers are PRJNA807611, SAMN25996056 and SRR18050964 Direct link to data: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA807611.

Techniques:

Journal: Data in Brief

Article Title: Dataset from genome sequencing, assembly and mining of microsatellite markers in barred-button quail ( Turnix suscitator )

doi: 10.1016/j.dib.2023.109288

Figure Lengend Snippet:

Article Snippet: Data accessibility , Repository name: Mendeley Data and National Center for Biotechnology Information (NCBI) For Mendeley data Whole genome contig assemblies from SOAPdenovo2 and SPAdes aligners are stored in folder “Soapdenovo2_assembly” and “Spades_assembly” respectively. Output file from Krait software, containing information of the mined genome wide microsatellite motifs and its various attributes are stored in folder “Krait_output”, file name “Msat_BBQ_23092021.html”. Information regarding 50 most polymorphic microsatellite and its in-silico PCR amplification results are stored in folder “Krait_output”, file names “50_most_putative_primers” and “In_silico_validation” respectively. Microsatellite motif information for each primer is also stored in folder “Krait_output” under file name “In_silico_validation_with_motif_info”. Identifier DOI: 10.17632/hfntj4vhpb.2 Direct link to folder: https://data.mendeley.com/datasets/hfntj4vhpb/2 National Center for Biotechnology Information (NCBI) Datasets and information on the whole genome paired-end sequences can be obtained from: BioProject, BioSample and SRA numbers are PRJNA807611, SAMN25996056 and SRR18050964 Direct link to data: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA807611.

Techniques: Sequencing, High Molecular Weight, DNA Extraction, Genome Wide, Software, Amplification

Journal: Genomics

Article Title: Phylogenetic determinants of toxin gene distribution in genomes of Brevibacillus laterosporus

doi: 10.1016/j.ygeno.2019.06.020

Figure Lengend Snippet: Features of the Brevibacillus laterosporus genomes.

Article Snippet: For CCEB342, the genome assembled into 113 contigs ranging from 130 to 483,838 bp, and for NRS590 into 162 contigs ranging from 126 to 267,511 bp, both from Illumina short-read assemblies.

Techniques: Plasmid Preparation